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Peer-reviewed journal publications

h-index= 76 (Google Scholar)
>22'250+ citations (Google scholar)

 


 

 

2024

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Mansouri Z, Salimi Y, Hajianfar G, Bianchetto Wolf N, Knappe L, Xhepa G, Gleyzolle A, Ricoeur A, Garibotto V, Mainta I and Zaidi H "The role of biomarkers and dosimetry parameters in overall and progression free survival prediction for patients treated with personalized 90Y glass microspheres SIRT: A preliminary machine learning study" Eur J Nucl Med Mol Imaging (2024) in press

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Salimi Y, Hajianfar G, Mansouri Z, Sanaat A, Amini M, Shiri I and Zaidi H "Organomics: A novel concept reflecting the importance of PET/CT healthy organ radiomics in non-small cell lung cancer prognosis prediction using machine learning" Clin Nucl Med (2024) in press

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Dadgar H, Norouzbeigi N, Assadi M, Al-balooshi B, Al-Ibraheem A, Haidar M, Omar Y, Esmail AA, Al-Alawi HM, Usmani S, Cimini A, Arabi H and Zaidi H "Initial clinical experience using 68Ga-FAPI-46 for detecting various cancer types" Hell J Nucl Med (2024) in press

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Sanaat A, Boccalini C, Mathoux G, Perani D, Frisoni GB, Haller S, Montandon ML, Rodriguez C, Giannakopoulos P, Garibotto V and Zaidi H "A deep learning model for generating 18F-FDG PET images from early-phase 18F-Florbetapir and 18F-Flutemetamol brain PET images" Eur J Nucl Med Mol Imaging (2024) in press

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Arabi H and Zaidi H "Contrastive learning vs. self-learning vs. deformable data augmentation in semantic segmentation of medical images" J Imaging Inform Med (2024) in press

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Hajianfar G, Hosseini SA, Bagherieh S, Oveisi M, Shiri I and Zaidi H "Impact of harmonization on the reproducibility of MRI radiomic features when using different scanners, acquisition parameters and image pre-processing techniques: A phantom study" Med Biol Eng Comput (2024) in press

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Yousefirizi F, Shiri I, Hyun JO, Bloise I, Martineau P, Wilson D, Bénard F, Sehn LH, Savage KJ, Zaidi H, Uribe CF, Rahmim A "Semi-supervised learning towards automated segmentation of PET images with limited annotations: Application to lymphoma patients" Phys Eng Sci Med (2024) in press

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Izadi S, Shiri I, Uribe CF, Geramifar P, Zaidi H, Rahmim A, Hamarneh G "Enhanced direct joint attenuation and scatter correction of whole-body PET images via context-aware deep networks" Z Med Phys (2024) in press

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Xin L, Zhuo W, Liu Q, Xie T and Zaidi H "Triple-source saddle-curve cone-beam photon counting CT image reconstruction: A simulation study" Z Med Phys (2024) in press

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Sun H, Huang Y, Hu D, Hong X, Salimi Y, Lv W, Chen H, Zaidi H, Wu H, Lu L "Artificial intelligence-based joint attenuation and scatter correction strategies for multi-tracer total-body PET"EJNMMI PhysVol. 11, No. 1, pp 66 (2024).

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Toosi A, Shiri I, Zaidi H and Rahmim A "Segmentation-free outcome prediction in head and neck cancer: Deep learning-based feature extraction from multi-angle maximum intensity projections (MA-MIPs)" Cancers Vol. 16, No. 14, pp 2538 (2024).

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Papadakis A, Gianakaki V, Stratakis J, Myronakis M, Zaidi H and Damilakis J "Digital phantom versus patient-specific radiation dosimetry in adult routine thorax CT examinations" J Appl Clin Med Phys Vol. 25, No. 7, pp e14389 (2024).

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Shiri I, Salimi Y, Sirjani N, Razeghi B, Bagherieh S, Pakbin M, Mansouri Z, Hajianfar G, Haddadi Avval A, Askari D, Ghasemian M, Sandoughdaran S, Sohrabi A, Sadati E, Livani S, Iranpour P, Kolahi S, Khosravi B, Bijari S, Seyfollahi S, Atashzar MR, Hasanian M, Shahhamzeh A, Teimouri A, Goharpey N, Shirzad-Aski H, Karimi J, Radmard AR, Rezaei-Kalantari K, Ghelich Oghli M, Oveisi M, Sadr Vafaei A, Voloshynovskiy S and Zaidi H "Differential privacy preserved federated learning for prognostic modeling in COVID-19 patients using large multi-institutional CT dataset" Med Phys Vol. 51, No. 7, pp 4736-4747 (2024).

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Hosseini SA, Shiri I, Ghafarian P, Hajianfar G, Atlas Haddadi A, Seyfi M, Servaes S, Hanaoka M, Rosa-Neto P, Zaidi H and Ay MR "The effect of harmonization on the variability of PET radiomic features extracted using various segmentation methods" Ann Nucl Med Vol. 38, No. 7, pp 493-507 (2024).

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Akhavanallaf A, Joshi S, Mohan A, Worden FP, Kraus JC, Zaidi H, Frey K, Suresh K, Dewaraja Y and Wong KK "Enhancing precision: A predictive model for 177Lu-DOTATATE treatment response in neuroendocrine tumors using quantitative 68Ga-DOTATATE PET and clinicopathological biomarkers" Theranostics Vol. 14, No. 9, pp 3708-3718 (2024).

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Salimi Y, Mansouri Z, Hajianfar G, Sanaat A, Shiri I, and Zaidi H "Fully automated explainable abdominal CT contrast media phase classification using organ segmentation and machine learning" Med Phys Vol 51, No. 6, pp 4095-4104 (2024).

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Abdollahi H, Yousefirizi F, Shiri I, Brosch-Lenz J, Mollaheydar E, Fele-Paranj A, Shi K, Zaidi H, Alberts I, Soltani M, Uribe C, Saboury B, Rahmim A "Theranostic digital twins: Concept, framework and roadmap towards personalized radiopharmaceutical therapies" Theranostics Vol. 14, No. 9, pp 3404-3422 (2024).

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Yousefirizi F, Klyuzhin IS, Hyun J, Harsini S, Tie X, Shiri I, Shin M, Lee C, Cho SY, Bradshaw T, Zaidi H, Bénard F, Sehn LH, Savage KJ, Steidl C, Uribe CF and Rahmim A "TMTV-Net: Fully automated total metabolic tumor volume segmentation in lymphoma PET/CT images – A multi-center generalizability analysis" Eur J Nucl Med Mol Imaging Vol. 51, No. 7, pp 1937-1954 (2024).

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Arabi H, Saberi Manesh A and Zaidi H "Innovations in dedicated PET instrumentation: From the operating room to specimen imaging" Phys Med Biol Vol. 69, No. 11, pp 11TR03 (2024).

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Radnia A, Alikhani A, Teimourian B, Nejad MY, Farahani MH, Pashaei F, Rahmim A, Zaidi H, Ay MR "Development of novel low-cost readout electronics for large field-of-view gamma camera detectors" Phys Med Vol. 121, pp 103357 (2024).

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Hajianfar G, Sabouri M, Salimi Y, Amini M, Bagheri S, Jenabi E, Hekmat S, Maghsudi M, Mansouri Z, Khateri M, Jamshidi MH, Jafari E, Rajabi AB, Asadi M, Oveisi M, Shiri I and Zaidi H "Artificial intelligence-based analysis of whole-body bone scintigraphy: The quest for the optimal deep learning algorithm and comparison with human observer performance" Z Med Phys Vol. 34, No. 2, pp 242-257 (2024).

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Mansouri Z, Salimi Y, Akhavanallaf A, Shiri I, Teixeira EPA, Hou X, Beauregard J-M, Rahmim A and Zaidi H "Deep transformer-based personalized dosimetry from SPECT/CT images: A hybrid approach for [177Lu]Lu-DOTATATE radiopharmaceutical therapy" Eur J Nucl Med Mol Imaging Vol. 51, No. 6, pp 1516-1529 (2024).

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Bagheri H, Mahdavi SR, Geramifar P, Neshaseh-Riz A, Sajadi Rad M, Dadgar H, Arabi H and Zaidi H "An update on the role of mpMRI and 68Ga-PSMA PET imaging in primary and recurrent prostate cancer" Clin Genitourin Cancer Vol. 22, No. 3, pp 102076 (2024).

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Ahmadyar Y, Kamali-Asl A, Arabi H, Samimi R and Zaidi H "Hierarchical approach for pulmonary-nodule identification from CT images using YOLO model and a 3D neural network classifier" Radiol Phys Technol Vol. 17, No. 1, pp 124-134 (2024).

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Mecheter I, Abbod M, Zaidi H and Amira A "Transfer learning from T1-weighted to T2-werighted MR sequences for brain image segmentation" CAAI Trans Intell Technol Vol. 9, No. 1, pp 26-39 (2024).

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Jahangir R, Kamali-Asl A, Arabi H, and Zaidi H "Strategies for deep learning-based attenuation and scatter correction of brain 18F-FDG PET images in the image domain" Med Phys Vol. 51, No. 2, pp 870-880 (2024).

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Whybra P, Zwanenburg A, Andrearczyk V, Schaer R, Apte A, Ayotte A, Baheti B, Bakas S, Bettinelli A, Boellaard R, Boldrini L, Buvat I, Cook GJR, Dietsche F, Dinapoli N, Goh V, Guckenberger M, Hatt M, Hosseinzadeh M, Iyer A, Jaouen V, Lenkowicz J, Loutfi MAL, Löck S, Marturano F, Morin O, Nioche C, Orlhac F, Pati S, Rahmim A, Rezaeijo SM, Rookyard C, Salmanpour MR, Schindele A, Shiri I, Spezi E, Tanadini-Lang S, Tixier F, Upadhaya T, Valentini V, van Griethuysen J, Yousefirizi F, Zaidi H, Muller H, Vallières M, and Depeursinge A, "The Image Biomarker Standardization Initiative: Standardized convolutional filters for quantitative radiomics" Radiology Vol. 310, No. 2, pp e231319 (2024).

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Shiri I, Salimi Y, Saberi A, Pakbin M, Hajianfar G, Avval AH, Sanaat A, Akhavanallaf A, Mostafaei S, Mansouri Z, Askari D, Ghasemian M, Sharifipour E, Sandoughdaran S, Sohrabi A, Sadati E, Livani S, Iranpour P, Khosravi B, Khateri M, Bijari S, Atashzar MR, Shayesteh SP, Babaei MR, Jenabi E, Hasanian M, Shahhamzeh A, Foroghi Ghomi SY, Mozafari A, Shirzad-Aski H, Bozorgmehr R, Goharpey N, Abdollahi H, Geramifar P, Radmard AR, Arabi H, Rezaei-Kalantari K, Oveisi M, Rahmim A and Zaidi H "Differentiation of COVID-19 pneumonia from other lung diseases using CT radiomic features and machine learning: A large multicentric cohort study" Int J Imaging Syst Technol Vol. 34, No. 2, pp e23028 (2024).

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Mansouri Z, Salimi Y, Amini M, Hajianfar G, Oveisi M, Shiri I and Zaidi H "Development and validation of survival prognostic models for head and neck cancer patients using machine learning and dosiomics and CT radiomic features: A multicentric study" Radiat Oncol Vol. 19, No. 1, pp 12 (2024).

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Young P, Heeman F, Axelsson J, Collij LE, Saint-Aubert L, Sanaat A, Lubberink M, Frisoni G, Zaidi H, Barkhof F, Farrar G, Baker S, Gispert JD, Garibotto V, Rieckmann A and Schöll M "Impact of reduced injected dose on the assessment of amyloid PET scans" Eur J Nucl Med Mol Imaging Vol. 51, No. 3, pp 734-748 (2024).

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Shiri I, Razeghi B, Ferdowsi S, Salimi Y, Gündüz D, Teodoro D, Voloshynovskiy and Zaidi H "PRIMIS: Privacy-preserving medical image sharing via deep sparsifying transform learning with obfuscation" J Biomed Inform Vol. 150, pp 104583 (2024).

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Shiri I, Amini M, Yousefirizi F, Vafaei Sadr A, Hajianfar G, Salimi Y, Mansouri Z, Jenabi E, Maghsoudi M, Mainta I, Becker M, Rahmim A and Zaidi H "Information fusion for fully automated segmentation of head & neck tumors from PET and CT images" Med Phys Vol. 51, No. 1, pp 319-333 (2024).

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Sanaat A, Amini M, Arabi H and Zaidi H "The quest for multifunctional and dedicated PET instrumentation with irregular geometries" Ann Nucl Med Vol. 38, No. 1, pp 31-70 (2024).

 

2023

 

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Asadi A, Akhavanallaf A, Hossein SA, Vosoughi N and Zaidi H "Development and validation of an optimal GATE model for proton pencil-beam scanning delivery" Z Med Phys Vol. 33, No. 4, pp 591-600 (2023).

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Hajianfar G, Haddadi Avval A, Hosseini SA, Nazari M, Oveissi M, Shiri I and Zaidi H "Time-to-event overall survival prediction in glioblastoma multiforme patients using magnetic resonance imaging radiomics" Radiol Med Vol. 128, No. 12, pp 1521-1534 (2023).

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Shiri I, Salimi Y, Maghsudi M, Jenabi E, Harsini S, Razeghi B, Mostafaei S, Hajianfar G, Sanaat A, Jafari E, Samimi R, Khateri M, Sheikhzadeh P, Geramifar P, Dadgar H, Bitrafan Rajabi A, Assadi M, Benard F, Vafaei Sadr A, Voloshynovskiy S, Mainta I, Uribe C, Rahmim A and Zaidi H "Differential privacy preserved federated transfer learning for multi-institutional 68Ga-PET image artifacts detection and disentanglement" Eur J Nucl Med Mol Imaging Vol. 51, No. 1, pp 40-53 (2023).

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Salimi Y, Akhavanallaf A, Mansouri Z, Shiri I and Zaidi H "Real-time, acquisition parameter-free, voxelwise patient-specific Monte Carlo dose reconstruction in total-body CT scanning using deep neural networks" Eur Radiol Vol. 33, No. 12, pp 9411-9424 (2023).

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Rahmim A, Toosi A, Salmanpour MR, Dubljevic N, Janzen I, Shiri I, Yuan R, Ho C, Zaidi H, MacAulay C, Uribe C, Yousefirizi F "Tensor radiomics: Paradigm for systematic incorporation of multi-flavoured radiomics features" Quant Imaging Med Surg Vol. 13, No. 12, pp 7680-7694 (2023).

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Shiri I, Salimi Y, Hervier E, Pezzoni A, Sanaat A, Mostafaei S, Rahmim A, Mainta I, Zaidi H "Artificial intelligence-driven single-shot PET image artifact detection and disentanglement: Towards routine clinical image quality assurance" Clin Nucl Med Vol. 48, No. 12, pp 1035-1046 (2023).

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Rezaei H, Sheikhzadeh P, Ghafarian P, Zaidi H and Ay MR "Accurate modeling and performance evaluation of a total-body PET scanner using Monte Carlo simulations" Med Phys Vol. 50, No. 11, pp 6815-6827 (2023).

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Taleie H, Hajianfar G, Sabouri M, Parsaee M, Houshmand G, Bitarafan Rajabi A, Zaidi H and Shiri I "Left ventricular myocardial dysfunction evaluation in thalassemia patients using echocardiographic radiomic features and machine learning algorithms" J Dig Imaging Vol. 36, No. 6, pp 2494-2506 (2023).

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Hashemi S, Aghamiri SM-R, Siavashpour Z, Kahani M, Zaidi H and  Jaberi R "Hydrogen nanobubbles: A novel approach toward radio-sensitization agents" Med Phys Vol. 50, No. 10, pp 6589-6599 (2023).

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Khodabakhshi Z, Amini M, Hajianfar J, Oveisi M, Shiri I and Zaidi H "Dual-centre harmonised multimodal PET/CT image radiomic features and machine learning algorithms for Non-Small Cell Lung Cancer histopathological subtype phenotype decoding" Clin Oncol Vol. 35, No. 11, pp 713-725 (2023).

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Hemmati H, Kamali-Asl A, Ghafarian P, Rahmim A, Zaidi H and Ay MR "List-mode quantitative joint reconstruction of activity and attenuation maps in time-of-flight PET" J Instrum Vol. 18, No. 9, pp P09041 (2023).

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Arabi H and Zaidi H "Recent advances in Positron Emission Tomography/Magnetic Resonance Imaging Technology" Magn Reason Imaging Clin N Am Vol. 31, No. 4, pp 503-515 (2023).

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Amini M, Pursamimi M, Hajianfar G, Salimi Y, Saberi A, Mehri-Kakavand G, Nazari M, Ghorbani M, Shalbaf A, Shiri I and Zaidi H "Machine learning-based diagnosis and risk stratification of coronary artery disease using myocardial perfusion imaging SPECT: A radiomics study" Sci Rep Vol. 13,  pp 14920 (2023).

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Becker M, de Vito C, Dulguerov N and Zaidi H "PET/MR imaging in head and neck cancer" Magn Reason Imaging Clin N Am Vol. 31, No. 4, pp 539-564 (2023).

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Puri T, Frost ML, Moore AEB, Choudhury A, Vinjamuri S, Mahajan A, Fynbo C, Vrist M, Thiel J, Kairemo K, Wong J, Zaidi H, Revheim M-E, Werner TJ, Alavi A, Cook GJR, Blake GM "Utility of a simplified [18F] sodium fluoride PET imaging method to quantify bone metabolic flux for a wide range of clinical applications" Front Endocrinol Vol. 14, pp 1236881 (2023).

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Böhringer AS, Sanaat A, Arabi H and Zaidi H "An active learning approach to train a deep learning algorithm for tumor segmentation from brain MR images" Insights Imaging Vol. 14, No. 1, pp 141 (2023).

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Mohebi M, Amini M, Alemzadeh-Ansari MJ, Alizadeh Asl A, Bitarafan Rajabi A, Shiri I, Zaidi H and Orooji M "Post-revascularization ejection fraction prediction for patients undergoing percutaneous coronary intervention based on myocardial perfusion SPECT imaging radiomics: A machine learning study" J Dig Imaging Vol. 36, No. 4, pp 1348-1363 (2023).

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Dashtbani Moghari M, Sanaat A, Young N, Moore K, Zaidi H, Evans A, Fulton R, and Kyme A "Reducing scan duration and radiation dose in cerebral CT perfusion imaging using a recurrent neural network" Phys Med Biol Vol. 68, No. 16, pp 165005 (2023).

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Akhavanallaf A, Peterson AB, Fitzpatrick K, Roseland M, Wong KK, El Naqa I, Zaidi H and Dewaraja Y "The predictive value of 68Ga-DOATATE PET and biomarkers in 177Lu-PRRT tumor dosimetry" Eur J Nucl Med Mol Imaging Vol. 50, No. 10, pp 2984-2996 (2023).

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Shiri I, Razeghi B, Sadr AV, Amini M, Salimi Y, Ferdowsi S, Boor P, Gündüz D, Voloshynovskiy and Zaidi H "Multi-institutional PET/CT image segmentation using federated deep transformer learning" Comput Meth Prog Biomed Vol. 240, pp 107706 (2023).

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Riveira-Martin M, Akhavanallaf A, Mansouri Z, Bianchetto Wolf N, Salimi Y, Ricoeur A, Mainta I, Garibotto V, Lopez Medina A and Zaidi H "Predictive value of 99mTc-MAA-based theragnostic dosimetry in personalized 90Y-SIRT planning of liver malignancies" EJNMMI Res Vol. 13, No. 1, pp 63 (2023).

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Qu S, Liu H, Xie T, Giger ME Quan G and and Zaidi H "Patient-specific fetal radiation dosimetry for pregnant patients undergoing abdominal and pelvic CT imaging" Med Phys Vol. 50, No. 6, pp 3801-3815 (2023).

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Sanaat A, Shooli H, Böhringer AS, Sadeghi M, Shiri I, Salimi Y, Ginovart N, Garibotto V, Arabi H and Zaidi H "A cycle-consistent adversarial network for brain PET partial volume correction without prior anatomical information" Eur J Nucl Med Mol Imaging Vol. 50, No. 7, pp 1881-1896 (2023).

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Salimi Y, Shiri I, Akhavan A, Mansouri Z, Arabi H and Zaidi H "Fully automated accurate patient positioning in computed tomography using anterior-posterior localizer images and a deep neural network: A dual-center study" Eur Radiol Vol. 33, No. 5, pp 3243-3252 (2023).

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Qu S, Xie T, Giger ME and Zaidi H "Construction of a digital fetus library for radiation dosimetry" Med Phys Vol. 50, No. 4, pp 2577-2589 (2023).

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Sabouri M, Hajianfar G, Hosseini Z, Amini M, Mohebi M, Ghaedian T, Madadi S, Rastgou F, Oveisi M, Bitarafan Rajabi A, Shiri I and Zaidi H "Myocardial perfusion SPECT imaging radiomic features and machine learning algorithms for cardiac contractile pattern recognition" J Dig Imaging Vol. 36, No. 2, pp 497-509 (2023).

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Farhadi F, Rajagopal JR, Veziroglu EM, Abdollahi H, Shiri I, Nikpanah M, Zaidi H, Rahmim A and Saboury B "Multi-scale temporal imaging: From micro- and meso- to macro-scale-time nuclear medicine" PET Clin Vol. 18, No. 1, pp 135-148 (2023).

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Shiri I, Sadr AV, Akhavan A, Salimi Y, Sanaat A, Amini M, Razeghi B, Saberi A, Arabi H, Ferdowsi S, Voloshynovskiy S, Gündüz D, Rahmim A and Zaidi H "Decentralized collaborative multi-institutional PET attenuation and scatter correction using federated deep learning" Eur J Nucl Med Mol Imaging Vol. 50, No. 4, pp 1034-1050 (2023).

2022

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Arian F, Amini M, Mostafaei S, Rezaei Kalantari K, Hadadi Aval A, Shahbazi Z, Kasani K, Bitarafan Rajabi1 A, Chatterjee S, Oveisi M, Shiri I and Zaidi H "Myocardial function prediction after coronary artery bypass grafting using MRI radiomics features and machine learning algorithms" J Dig Imaging Vol. 35, No. 6, pp 1708-1718 (2022).

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Salimi Y, Shiri I, Akhavanallaf A, Mansouri Z, Sanaat A, Pakbin M, Hossein MG, Arabi H, and Zaidi H "Deep learning-based calculation of patient size and attenuation surrogates from localizer image: Toward personalized CT protocol optimization for thorax imaging" Eur J Radiol Vol. 157, pp 110602 (2022).

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Sanaat A, Akhavanallaf A, Shiri I, Salimi Y, Arabi H and Zaidi H "Deep-TOF-PET: Deep learning-guided generation of time-of-flight (TOF) PET from non-TOF brain PET images in the image and projection domains" Hum Brain Mapp Vol. 43, No. 16, pp 5032-5043 (2022).

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Manafi-Farid R, Askari E, Shiri I, Asadi M, Khateri M, Pirich C, Zaidi H and Beheshti M "[18F]-FDG PET/CT radiomics and artificial intelligence in lung cancer: Technical aspects and potential clinical applications" Sem Nucl Med Vol. 52, No. 6, pp 759-780 (2022).

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Moradi Khaniabadi P, Bouchareb Y, Al Dhuhli H, Shinri I, Al Kindi F, Moradi Khaniabadi B, Zaidi H, Rahmim A "Two-step machine learning to diagnose and predict involvement of lungs in COVID-19 and pneumonia using CT radiomics" Comput Biol Med Vol. 150, pp 106165 (2022).

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Zaker N, Haddad K, Faghihi R, Arabi H and Zaidi H "Direct inference of Patlak parametric images in whole-body PET/CT imaging using convolutional neural networks" Eur J Nucl Med Mol Imaging Vol. 49, No. 12, pp 4048-4063 (2022).

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Makkia R, Nelson K, Zaidi H and Dingfelder M "Hybrid computational pregnant female phantom construction for radiation dosimetry applications" Biomed Phys Eng Exp Vol. 8, No. 6, pp 065015 (2022).

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Asadi A, Akhavanallaf A, Hossein SA, Vosoughi N and Zaidi H "Comparative study of passive scattering and active scanning proton therapy techniques using Monte Carlo simulations" J Instrum Vol. 17, No. 9, pp P09008 (2022).

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Shiri I, Mostafaei S, Avval AH, Salimi Y, Sanaat Y, Akhavanallaf A, Arabi H, Rahmim A and Zaidi H "High-dimensional multinomial multiclass severity scoring of COVID-19 pneumonia using CT radiomics features and machine learning algorithms" Sci Rep Vol. 12, No. 1, pp 14817 (2022).

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Sanaat A, Jamalizadeh M, Khanmohammadi H. Arabi H and Zaidi H "Active-PET: A multifunctional PET scanner with dynamic gantry size featuring high-resolution and high-sensitivity imaging: A Monte Carlo simulation study" Phys Med Biol Vol. 67, No. 15, pp 155021 (2022).

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Mecheter I,  Abbod M, Amira A and Zaidi H "Deep learning with multiresolution handcrafted features for brain MR images segmentation" Art Intell Med Vol. 131, pp 102365 (2022).

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Katirtisidou E, Rager O, Varoquaux A, Poncet A, Lenoir V, Monnier Y, Dulguerov N, Platon A, Garibotto V, Zaidi H and Becker M "Detection of distant metastases and distant second primary cancers in head and neck squamous cell carcinoma: Comparison of 18F-FDG PET/MRI and 18F-FDG PET/CT" Insights Imaging Vol. 13, No. 1, pp 121 (2022).

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Akhavanallaf A, Fayad H, Salimi Y, Aly A, Kharita H, Al Naemi H and Zaidi H "An update on computational anthropomorphic anatomical models" Dig Health Vol. 8, pp 20552076221111941 (2022).

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Hosseini SA, Shiri I, Hajianfar G, Bahadorzade B, Ghafarian P, Zaidi H and Ay MR "Synergistic impact of motion and acquisition/reconstruction parameters on 18F-FDG PET radiomics features in non-small cell lung cancer: Phantom and clinical studies" Med Phys Vol. 49, No. 6, pp 3783-3796 (2022).

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Shiri I, Sadr AV, Amini M, Salimi Y, Sanaat A, Akhavan A,  Razeghi B, Ferdowsi S, Saberi A, Arabi H, Becker M, Voloshynovskiy S, Gündüz D, Rahmim A and Zaidi H "Decentralized distributed multi-institutional PET image segmentation using a federated deep learning framework" Clin Nucl Med Vol. 47, No 7, pp 606-617 (2022).

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Sanaat A, Shiri I, Ferdowsi S, Arabi H and Zaidi H "Robust-Deep: A method for increasing brain imaging datasets to improve deep learning models’ performance and robustness" J Dig Imaging Vol. 35, No. 3, pp 469-481 (2022).

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Shiri I, Salimi Y, Pakbin M, Hajianfar G, Avval AH, Sanaat A, Mostafaei S, Akhavanallaf A, Saberi A, Mansouri Z, Askari D, Ghasemian M, Sharifipour E, Sandoughdaran S, Sohrabi A, Sadati E, Livani S, Iranpour P, Kolahi S, Khateri M, Bijari S, Atashzar MR, Shayesteh SP, Babaei MR, Jenabi E, Hasanian M, Shahhamzeh A, Foroghi Ghomi SY, Mozafari A, Teimouri A, Movaseghi F, Ahmari A, Goharpey N, Bozorgmehr R, Shirzad-Aski H, Mortazavi R, Karimi J, Mortazavi N, Besharat S, Afsharpad M, Abdollahi H, Geramifar P, Radmard AR, Arabi H, Rezaei-Kalantari K, Oveisi  M, Rahmim A and Zaidi H "COVID-19 prognostic modeling using CT radiomic features and machine learning algorithms: Analysis of a multi-institutional dataset of 14,339 patients" Comput Biol Med Vol. 145, pp 105467 (2022).

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Mecheter I, Abbod M, Zaidi H and Amira A "Brain MR images segmentation using 3D CNN with features recalibration mechanism for pseudo-CT synthesis" Neurocomputing Vol. 491, pp 232-243 (2022).

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Olia NA, Kamali-Asl A, Tabrizi SH, Geramifar P, Sheikhzadeh P, Farzanefar S, Arabi H and Zaidi H "Deep learning-based denoising of low-dose SPECT myocardial perfusion images: Quantitative assessment and clinical performance" Eur J Nucl Med Mol Imaging Vol. 49, No 5, pp 1508-1522 (2022).

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Mostafapour S, Gholamiankhah F, Maroofpour S, Momennezhad M, Asadinezhad M,  Zakavi SR, Arabi H and Zaidi H "Deep learning-guided attenuation correction in the image domain for myocardial perfusion SPECT imaging" J Comput Des Eng Vol. 9, No 2, pp 434-447 (2022).

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Boutaghane N, Hesse M, Bouzid B, Zaidi H, Jamar F, and Walrand S "Dual-layer collimator for improved spatial resolution in SPECT with CZT cameras: An analytical and Monte Carlo study" Phys Med Biol Vol. 67, No. 6, pp 065006 (2022).

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Jabbarpour A, Mahdavi SR, Sadr AV, Esmaili G, Shiri I, and Zaidi H "Unsupervised pseudo CT generation using heterogenous multicentric CT/MR images and CycleGAN: Dosimetric assessment for 3D conformal radiotherapy" Comput Biol Med Vol. 143, pp 105277 (2022).

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Amini M, Hajianfar G, Avval AH, Nazari M, Deevband MR, Pveisi M, Shiri I, and Zaidi H "Overall survival prognostic modeling of non-small cell lung cancer patients using PET/CT harmonized radiomics features: The quest for the optimal machine learning algorithm" Clin Oncol Vol. 34, No. 2, pp 114-127 (2022).

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Shiri I, Amini M, Nazari M, Hajianfar G, Avval AH, Abdollahi H, Oveisi M, Arabi H, Rahmim A and Zaidi H "Impact of feature harmonization on radiogenomics analysis: Prediction of EGFR and KRAS mutations from non-small cell lung cancer PET/CT images" Comput Biol Med Vol. 142, pp 105230 (2022).

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Shiri I, Arabi H, Salimi Y, Sanaat A, Akhavanallaf A, Hajianfar G, Askari D, Moradi S, Mansouri Z, Pakbin M, Sandoughdaran S, Abdollahi H, Radmard AR, Rezaei-Kalantari K, Oghli MG, and Zaidi H "COLI-NET: Fully automated COVID-19 lung and infection pneumonia lesion detection and segmentation from chest CT images" Int J Imaging Syst Technol Vol. 32, No. 1, pp 12-25 (2022).

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Avard E, Shiri I, Hajianfar G, Abdollahi H, Kalantari KR, Kasani K, Houshmand  G, Bitarafan-Rajabi A, Deevband MR, Oveisi M and Zaidi H "Non-contrast cine cardiac magnetic resonance image radiomics features and machine learning algorithms for myocardial infarction detection" Comput Biol Med Vol. 141, pp 105145 (2022).

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Arabi H and Zaidi H "MRI-guided attenuation correction in torso PET/MRI: Frequency of outliers in segmentation-, atlas-, and deep learning-based approaches" Magn Reson Med Vol. 87, No. 2, pp 686-701 (2022).

 

2021

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Sanaat A, Schooli H, Ferdowsi S, Shiri I, Arabi H and Zaidi H "DeepTOFSino: A deep learning model for synthesizing full-dose TOF bin sinograms from their corresponding low-dose TOF bins" Neuroimage Vol. 245, pp 118697 (2021).

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Amirrashedi M, Sarkar S, Mamizadeh H, Ghadiri H, Ghafarian P, Zaidi H and Ay MR "Leveraging deep neural networks to improve numerical and perceptual image quality in low-dose preclinical PET imaging" Comput Med Imaging Graph Vol. 94, pp 102010 (2021).

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Salimi Y, Shiri I, Akhavanallaf A, Mansouri Z, Saberi A, Sanaat A, Pakbin M, Askari D, Sandoughdaran S, Sharifipour E, Arabi H, and Zaidi H "Deep learning-based fully automated Z-axis coverage range definition from scout scans to eliminate overscanning in chest CT scanning" Insights Imaging Vol. 12, No. 1, pp 162 (2021).

Followed with a special Blog on ESR

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Edalat-Javid M, Shiri I, Hajianfar G, Abdollahi H, Arabi H, Oveisi N, Javadian M, Zafarghandi MS, Malek H, Bitarafan-Rajabi A, Oveisi M and Zaidi H "Cardiac SPECT radiomic features repeatability and reproducibility: A multi-scanner phantom study" J Nucl Cardiol Vol. 28, No. 6, pp 2730-2744 (2021).

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Shiri I, Sabet KA, Arabi H, Pourkeshavarz M, Teimourian B, Ay MR and Zaidi H "Standard SPECT myocardial perfusion estimation from half-time acquisitions using deep convolutional residual neural networks" J Nucl Cardiol Vol. 28, No. 6, pp 2761-2779 (2021).

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Khodabakhshi Z, Amini M, Mostafaei S, Avval AH, Nazari M, Oveisi M, Shiri I and Zaidi H "Overall survival prediction in renal cell carcinoma patients using Computed Tomography radiomics and clinical information" J Dig Imaging Vol. 34, No. 5, pp 1086-1098 (2021).

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Amini M, Nazari M, Shiri I, Hajianfar G, Deevband MR, Abdollahi H, Arabi H, Rahmim A and Zaidi H "Multi-level multi-modality (PET and CT) fusion radiomics: Prognostic modeling for non-small cell lung carcinoma" Phys Med Biol Vol. 66, No. 20, pp 205017 (2021).

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Shiri I, Arabi H, Sanaat A, Janebi E, Becker M and Zaidi H "Fully automated gross tumour volume delineation from PET in head and neck cancer using deep learning algorithms" Clin Nucl Med Vol. 46, No. 11, pp 872-883 (2021).

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Sanaat A, Mirsadeghi E, Razeghi B, Ginovart N and Zaidi H "Fast dynamic brain PET imaging using stochastic variational prediction for recurrent frame generation" Med Phys Vol. 48, No. 9, pp 5059-5071 (2021).

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Le Guevelou J, Achard V, Mainta I, Zaidi H, Garibotto V, Lazorzeff I, Sargos P, Menard C Zilli T, "PET/CT-based salvage radiotherapy for recurrent prostate cancer after radical prostatectomy: impact on treatment management and future directions" Front Oncol Vol. 11, pp 742093 (2021).

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Ghabrial A, Franklin D and Zaidi H "A Monte Carlo simulation study of scatter fraction and the impact of patient BMI on scatter in long axial field-of-view PET scanners" Z Med Phys Vol. 31, No. 3, pp 305-315 (2021).

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Khodabakhshi Z, Mostafaei S, Arabi H, Oveisi M, Shiri I and Zaidi H "Non-small cell lung carcinoma histopathological subtype phenotyping using high-dimensional multinomial multiclass CT radiomics signature" Comput Biol Med Vol. 136, pp 104752 (2021).

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Akhavanallaf A, Mohammadi R, Shiri I, Salimi Y, Arabi H and Zaidi H "Personalized brachytherapy dose reconstruction using deep learning" Comput Biol Med Vol. 136, pp 104755 (2021).

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Bouchareb Y, Moradi Khaniabadi P, Al Kindi F, Al Dhuhli H, Shiri I, Zaidi H, Rahmim A "Artificial intelligence-driven assessment of radiological images for COVID-19" Comput Biol Med Vol. 136, pp 104665 (2021).

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Shayesteh PS, Nazari M, Salahshour A, Sandoughdaran S, Hajianfar G, Khateri M, Joybari AY, Jozian F, Feyzabad SHF, Arabi H, Shiri I and Zaidi H "Treatment response prediction using MRI-based pre-, post- and delta-radiomic features and machine learning algorithms in colorectal cancer" Med Phys Vol. 48, No. 7, pp 3691-3701 (2021).

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Arabi H and Zaidi H "Deep learning-based metal artefact reduction in PET/CT imaging" Eur Radiol Vol. 31, No. 8, pp 6384-6396 (2021).

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Ghelich Oghli M, Moradi S, Sirjani N, Gerami R, Ghaderi P, Shabanzadeh A, Shiri I, Arabi H and Zaidi H "Automatic fetal biometry prediction using a novel deep convolutional network architecture" Phys Med Vol. 88, pp 127-137 (2021).

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Lohrabian V, Kamali-Asl A, Ghadiri Harvani H, Hosseini Aghdam SR, Arabi H and Zaidi H"Comparison of the x-ray tube spectrum measurement using BGO, NaI, LYSO, and HPGe detectors in a preclinical mini-CT scanner: Monte Carlo simulation and practical experiment" Rad Phys Chem Vol. 189, pp 109666 (2021).

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Arabi H and Zaidi H "Assessment of deep learning-based PET attenuation correction frameworks in the sinogram domain" Phys Med Biol Vol. 66, No. 14, pp 145001 (2021).